Articles
Rubin, IN, Y Ispolatov, and M Doebeli. 2023. Adaptive diversification and niche packing on rugged fitness landscapes. Journal of Theoretical Biology.
Model source code
Rubin, IN, Y Ispolatov, and M Doebeli. 2022. Maximal ecological diversity exceeds evolutionary diversity in model ecosystems. Ecology Letters.
Model source code
Bodnar, TS, C Lee, A Wong, I Rubin, LW Parfrey, and J Weinberg. 2022. Evidence for long-lasting alterations in the fecal microbiota following prenatal alcohol exposure. Alcoholism: Clinical and Experimental Research
Rubin, IN, I Ispolatov, and M Doebeli. 2021. Evolution to alternative levels of stable diversity leaves areas of niche space unexplored. PLOS Computational Biology.
Supplementary video files, figures, and source code
Louca, S, IN Rubin, LL Madilao, J Bohlmann, M Doebeli, and LW Parfrey. 2020. Effects of forced taxonomic transitions on metabolic composition and function in microbial microcosms. Environmental microbiology reports.
Rubin, IN and M Doebeli. 2017. Rethinking the evolution of specialization: A model for the evolution of phenotypic heterogeneity. Journal of Theoretical Biology.
Graeden, E, R Fielding, KE Steinhouse, and IN Rubin. 2015. Modeling the Effect of Herd Immunity and Contagiousness in Mitigating a Smallpox Outbreak. Medical Decision Making.
Rubin, IN, SP Ellner, A Kessler, and KA Morrell. 2015. Informed herbivore movement and interplant communication determine the effects of induced resistance in an individual-based model. Journal of Animal Ecology.