PLINK v1.90p 64-bit (10 Oct 2016)
Options in effect:
  --allow-extra-chr
  --out Super-Scaffold_99
  --recode
  --vcf Super-Scaffold_99.vcf

Hostname: fastnode02
Working directory: /home/delmore/blackcaps_server/resequencing/formats_filtering/plink_vcf_fastphase
Start time: Mon Apr 17 11:02:08 2017

Random number seed: 1492419728
128827 MB RAM detected; reserving 64413 MB for main workspace.
--vcf: Super-Scaffold_99-temporary.bed + Super-Scaffold_99-temporary.bim +
Super-Scaffold_99-temporary.fam written.
988 variants loaded from .bim file.
108 people (0 males, 0 females, 108 ambiguous) loaded from .fam.
Ambiguous sex IDs written to Super-Scaffold_99.nosex .
Using 1 thread (no multithreaded calculations invoked).
Before main variant filters, 108 founders and 0 nonfounders present.
Calculating allele frequencies... done.
988 variants and 108 people pass filters and QC.
Note: No phenotypes present.
--recode ped to Super-Scaffold_99.ped + Super-Scaffold_99.map ... done.

End time: Mon Apr 17 11:02:08 2017