castor 




An R package for efficient phylogenetics on large trees.  

FAPROTAX 




Database and software for mapping prokaryotic taxa to metabolic functional groups  

MCM (Microbial Community Modeler) 




A computational framework for modeling microbial communities using dynamic flux balance analysis of genomebased cell models, in the context of a dynamical environment. Classical functional group models are also supported.  

peacots (Periodogram Peaks in Correlated Time Series) 




An R package for detecting cyclicity in time series using the OrnsteinUhlenbeck model as a (noncyclic) null hypothesis.  

Simona v1.0 




C++ Implementation of the BarnesHut treealgorithm for NBody simulations with electric and newtoniangravitational force fields. Also bundled is a creator program for generating start values for astronomically relevant Nbody mechanical systems.  

STDP v1.0 




Simple dataplotting gnuplotinterface for FORTRAN 90. Compatible with gnuplot 4.2.  

STPlot v2.6 




Open source C++ API for plotting with gnuplot. Supports multiple plots within one window, multiple graphs within one plot, 2D plots, 3D surface plots, histograms, heat maps with hierarchical clustering, vector field phase portraits and circular network plots. Maximum compatibility with gnuplot 4.6.5 and ISO C++98. Includes example code and a thorough user guide.  
