Papers using diversitree

2012/in press

Avaria-Llautureo J., Hernández C.E., Boric-Bargetto D., Canales-Aguirre C.B., Morales-Pallero B., and Rodríguez-Serrano E. 2012. Body size evolution in extant Oryzomyini rodents: Cope's rule or miniaturization? PloS One 7:e34654. [ doi ]
Bardon L., Chamagne J., Dexter K.G., Sothers C.A., Prance G.T., and Chave J. 2012. Origin and evolution of Chrysobalanaceae: insights into the evolution of plants in the Neotropics. Botanical Journal of the Linnean Society in press. [ doi ]
Bergmann P.J. and Irschick D.J. 2012. Vertebral evolution and the diversification of squamate reptiles. Evolution 66:1044-1058. [ doi ]
Betancur-R R., Ortí G., Stein A.M., Marceniuk A.P., and Pyron R.A. 2012. Apparent signal of competition limiting diversiﬁcation after ecological transitions from marine to freshwater habitats. Ecology Letters in press. [ doi ]
Boucher F.C., Thuiller W., Roquet C., Douzet R., Aubert S., Alvarez N., and Lavergne S. 2012. Reconstructing the origins of high-alpine niches and cushion life form in the genus Androsace s.l. (Primulaceae). Evolution 66:1255-1268. [ doi ]
Buerki S., Jose S., Yadav S.R., Goldblatt P., Manning J.C., and Forest F. 2012. Contrasting biogeographic and diversification patterns in two mediterranean-type ecosystems. PLos ONE 7:e39377. [ doi ]
Burbrink F.T., Ruane S., and Pyron R.A. 2012. When are adaptive radiations replicated in areas? ecological opportunity and unexceptional diversification in west indian dipsadine snakes (Colubridae: Alsophiini). Journal of Biogeography 39:465-475. [ doi ]
Claramunt S., Derryberry E.P., Brumfield R.T., and Remsen Jr J.V. 2012a. Ecological opportunity and diversification in a continental radiation of birds: Climbing adaptations and cladogenesis in the furnariidae. The American Naturalist 179:649-666. [ doi ]
Claramunt S., Derryberry E.P., Remsen Jr J.V., and Brumfield R.T. 2012b. High dispersal ability inhibits speciation in a continental radiation of passerine birds. Proceedings of the Royal Society of London, Series B Biological Sciences 279:1567-1574. [ doi ]
Drummond C.S., Eastwood R.J., Miotto S.T., , and Hughes C.E. 2012. Multiple continental radiations and correlates of diversification in Lupinus (Leguminosae): Testing for key innovation with incomplete taxon sampling. Systematic Biology in press. [ doi ]
Dumont E.R., Dávalos L.M., Goldberg A., Santana S.E., Rex K., and Voigt C.C. 2012. Morphological innovation, diversification and invasion of a new adaptive zone. Proceedings of the Royal Society of London, Series B Biological Sciences 279:1797-1805. [ doi ]
Floudas D., Binder M., Riley R., Barry K., Blanchette R.A., Henrissat B., Martínez A.T., Otillar R., Spatafora J.W., Yadav J.S., Aerts A., Benoit I., Boyd A., Carlson A., Copeland A., Coutinho P.M., de Vries R.P., Ferreira P., Findley K., Foster B., Gaskell J., Glotzer D., Górecki P., Heitman J., Hesse C., Hori C., Igarashi K., Jurgens J.A., Kallen N., Kersten P., Kohler A., Kües U., Kumar T.K.A., Kuo A., LaButti K., Larrondo L.F., Lindquist E., Ling A., Lombard V., Lucas S., Lundell T., Martin R., McLaughlin D.J., Morgenstern I., Morin E., Murat C., Nagy L.G., Nolan M., Ohm R.A., Patyshakuliyeva A., Rokas A., nas F.J.R.D., Sabat G., Salamov A., Samejima M., Schmutz J., Slot J.C., John F.S., Stenlid J., Sun H., Sun S., Syed K., Tsang A., Wiebenga A., Young D., Pisabarro A., Eastwood D.C., Martin F., Cullen D., Grigoriev I.V., and Hibbett D.S. 2012. The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science 336:1715-1719. [ doi ]
Gamble T., Greenbaum E., Jackman T.R., Russell A.P., and Bauer A.M. 2012. Repeated origin and loss of adhesive toepads in geckos. PLoS One 7:e39429. [ doi ]
Goldberg E.E. and Igić B. 2012. Tempo and mode in plant breeding system evolution. Evolution in press. [ doi ]
Gómez J.M. and Verdú M. 2012. Mutualism with plants drives primate diversification. Systematic Biology in press. [ doi ]
Grass Phylogeny Working Group II. 2012. New grass phylogeny resolves deep evolutionary relationships and discovers C₄ origins. New Phytologist 193:304-312. [ doi ]
Hugall A.F. and Stuart-Fox D. 2012. Accelerated speciation in colour-polymorphic birds. Nature in press. [ doi ]
Ikeda H., Nishikawa M., and Sota T. 2012. Loss of flight promotes beetle diversification. Nature Communications 3:648. [ doi ]
Magnuson-Ford K. and Otto S.P. 2012. Linking the investigations of character evolution and species diversification. The American Naturalist in press. [ doi ]
McDaniel S.F., Atwood J., and Burleigh J.G. 2012. Recurrent evolution of dioecy in bryophytes. Evolution in press. [ doi ]
Miglietta M.P. and Cunningham C.W. 2012. Evolution of life cycle, colony morphology and host-specificity in the family Hydractiniidae (Hydrozoa, Cnidaria). Evolution in press. [ doi ]
Price S.A., Hopkins S.S.B., Smith K.K., and Roth V.L. 2012. Tempo of trophic evolution and its impact on mammalian diversification. Proceedings of the National Acadamy of Sciences, USA in press. [ doi ]
Pyron R.A. and Burbrink F.T. 2012. Trait-dependent diversification and the impact of palaeontological data on evolutionary hypothesis testing in New World ratsnakes (tribe Lampropeltini). Journal of Evolutionary Biology 25:497-508. [ doi ]
Rojas D., Vale Á., Ferrero V., and Navarro L. 2012. The role of frugivory in the diversification of bats in the Neotropics. Journal of Biogeography in press. [ doi ]
Ross L., Hardy N.B., Okusu A., and Normark B.B. 2012. Large population size predicts the distribution of asexuality in scale insects. Evolution in press. [ doi ]
Scott J.E., Lack J.B., and Rabosa M.J. 2012. On the reversibility of mandibular symphyseal fusion. Evolution in press. [ doi ]
Syme A.E. and Oakley T.H. 2012. Dispersal between shallow and abyssal seas and evolutionary loss and regain of compound eyes in cylindroleberidid ostracods: Conflicting conclusions from different comparative methods. Systematic Biology 61:314-336. [ doi ]
Valente L.M., Manning J.C., Goldblatt P., and Vargas P. 2012. Did pollination shifts drive diversification in southern African Gladiolus? Evaluating the model of pollinator-driven speciation. The American Naturalist 180:83-98. [ doi ]
Weber M.G. and Keeler K.H. 2012. The phylogenetic distribution of extrafloral nectaries in plants. Annals of Botany in press. [ doi ]
Weir J.T. and Mursleen S. 2012. Diversity-dependent cladogenesis and trait evolution in the adaptive radiation of the auks (aves: Alcidae). Evolution in press. [ doi ]
Winger B.M., Lovette I.J., and Winkler D.W. 2012. Ancestry and evolution of seasonal migration in the Parulidae. Proceedings of the Royal Society of London, Series B Biological Sciences 279:610-618. [ doi ]
Zimkus B.M., Lawson L., Loader S.P., and Hanken J. 2012. Terrestrialization, miniaturization and rates of diversification in african puddle frogs (Anura: Phrynobatrachidae). PloS ONE 7:e35118. [ doi ]

2011

Cánovas F.G., Mota C.F., Serrão E.A., and Pearson G.A. 2011. Driving south: a multi-gene phylogeny of the brown algal family Fucaceae reveals relationships and recent drivers of a marine radiation. BMC Evolutionary Biology 11:371. [ doi ]
Cantalapiedra J.L., Fernández M.H., and Morales J. 2011. Biomic specialization and speciation rates in ruminants (cetartiodactyla, mammalia): A test of the resource-use hypothesis at the global scale. PloS One 6:e28749. [ doi ]
Eastman J.M. and Storfer A. 2011. Correlations of life-history and distributional-range variation with salamander diversification rates: Evidence for species selection. Systematic Biology 60:503-518. [ doi ]
Johnson M.T.J., FitzJohn R.G., Smith S.D., Rausher M.D., and Otto S.P. 2011. Loss of sexual recombination and segregation is associated with increased diversification in evening primroses. Evolution 65:3230-3240. [ doi ]
Matthews L.J., Arnold C., Machanda Z., and Nunn C.L. 2011. Primate extinction risk and historical patterns of speciation and extinction in relation to body mass. Proceedings of the Royal Society of London, Series B Biological Sciences 278:1246-1263. [ doi ]
Mayrose I., Zhan S.H., Rothfels C.J., Magnuson-Ford K., Barker M.S., Rieseberg L.H., and Otto S.P. 2011. Recently formed polyploid plants diversify at lower rates. Science 333:1257. [ doi ]
Olalla-Tárraga M.Á., McInnes L., Bini L.M., Diniz-Filho J.A.F., Fritz S.A., Hawkins B.A., Hortal J., Orme C.D.L., Rahbek C., Rodríguez M.Á., and Purvis A. 2011. Climatic niche conservatism and the evolutionary dynamics in species range boundaries: global congruence across mammals and amphibians. Journal of Biogeography 38:2237-2247. [ doi ]
Raia P., Carotenuto F., Eronen J.R., and Fortelius M. 2011. Longer in the tooth, shorter in the record? the evolutionary correlates of hypsodonty in Neogene ruminants. Proceedings of the Royal Society of London, Series B Biological Sciences 278:3474-3481. [ doi ]
Valente L.M., Savolainen V., Manning J.C., Goldblatt P., and Vargas P. 2011. Explaining disparities in species richness between Mediterranean floristic regions: a case study in Gladiolus (Iridaceae). Global Ecology and Biogeography 20:881-892. [ doi ]
Wilson A.W., Binder M., and Hibbett D.S. 2011. Effects of gasteroid fruiting body morphology on diversification rates in three independent clades of fungi estimated using binary state speciation and extinction analysis. Evolution 65:1305-1322. [ doi ]

2010

Anacker B.L., Whittall J.B., Goldberg E.E., and Harrison S.P. 2010. Origins and consequences of serpentine endemism in the california flora. Evolution 65:365-376. [ doi ]
FitzJohn R.G. 2010. Quantitative traits and diversification. Systematic Biology 59:619-633. [ doi ]
Goldberg E.E., Kohn J.R., Lande R., Robertson K.A., Smith S.A., and Igić B. 2010. Species selection maintains self-incompatibility. Science 330:493-495. [ doi ]
Lancaster L.T. 2010. Molecular evolutionary rates predict both extinction and speciation in temperate angiosperm lineages. BMC Evolutionary Biology 10:162. [ doi ]

2009

FitzJohn R.G., Maddison W.P., and Otto S.P. 2009. Estimating trait-dependent speciation and extinction rates from incompletely resolved phylogenies. systematic biology 58:595-611. Systematic Biology 58:595-611. [ doi ]