Biology 332 - Protistology Term 2 - 2002-2003

Biology 332 - Protistology - Supplemental References
Group
Topic
Reference
Ciliates physiology, behavior Machemer, H. and Deitmar, J.W. 1987. From structure to behavior: Stylonychia as a model system for cellular physiology. . In: Patterson, D,J, & Corliss, J.O. eds, Progress in Protistology 2, 213-330.
Cryptos, nucleomorph structure, phylogeny Maier, U.G. et al. 1991. Demonstration of nucleomorph encoded eukaryotic small subunit ribosomal RNA in cryptomonads. Mol. Gen. Genet. 1-7 (vol. not given)
greens, plants phylogeny Manhort, J.R. and Palmer. J.D. 1990. The gain of two chloroplast and RNA introns marks the green algae ancestors of land plants. Nature 345, 268-270.
Diatoms, crrysos origins, structure Mann, D.G. and H.J. Marchant. 1989. The origins of the diatom and its life cycle. In: J.C. Green et al. eds. The Chromophyte Algae. Problems and Perspectives pp. 307-323.
Diatoms reproduction, evolution Mann, D.G. 1986. Methods of sexual reproduction in Nitzschia: systematic and evolutionary implications. Diatom Res. 1, 193-203.
Diatoms origins, evolution, structure Mann, D.G. and Marchant, H.J. 1989. The origins of the diatom and its life cycle. In: The Chromophyte Algae: Problems and Perspectives, Green, J.C., Leadbeater, B.S.C. and Driver, W.L. eds.. Systematics Association Special Volume 38. Clarendon Press, Oxford pp. 307-23
reds, chloroplasts evolution Marcowitz, Y. and Loiseaux-de Goer. 1991. Plastid genomes of the Rhodophyta and Chromophyta constitute a distinct lineage which differs from that of the Chlorophyta and have a composite phylogenetic origin, perhaps like that of the Euglenophyta. Current Genetics 20, 427-430.
Evolution symbiosis Margulis, L. 1992. Biodiversity: molecular biological domains, symbiosis and kingdom origins. BioSystems 27, 39-52.
Protists text Margulis, L. and K. Schwartz (eds.) Five Kingdomns: Illustrated Guide to the Phyla of Life on Earth (2nd ed.) W.H. Freeman and Co.
Protists text Margulis, L. et al. (eds.). 1990. Handbook of Proctoctista. Jones and Bartlett. Boston. QW52 H353
Protists text Margulis, L. et al. (eds.).1993. Illustrated Glossasry of the Proctoctista. Jones and Bartlett. Boston. QW15 1458
Eugenozoa kinetoplastids physiology Maslov, D.A. and Simpson, L. 1992. The polarity of editing within a multiple gRNA-mediated domain is due to formation of anchors for upstream gRNAs by downstream editing. Cell 70, 459-67.
Greens structure Mattox, K.R. and K.D. Stewart 1984. Classification of the green algae: a concept based on component cytology. In: Irvine & John, eds. Systematics of the Green algae () Academic Press. pp. 29-72.
Euglenozoa kinetoplastids symbiosis parasitism Mauel, J. 1984. Mechanisms of survival of protozoan parasites in mononuclear phagocytes. Parasitology 88, 579-92.
Eugenozoa kinetoplastids symbiosis Mauel, J. 1990. Macrophage-parasite interactions in Leishmania infections. Journal for Leukocyte Biology 47, 187-93.
Euglenozoa kinetoplastids symbiosis parasitism Mauel, J. 1990. Macrophage-parasite interactions in Leishmania infections. Journal of Leucocyte Biology 47, 187-93.
Animal phylogeny McClintock Turbeville, J., Schulz, J.R. and Raff, R.A. 1994.Deuterostome phylogeny and the sister group of the chordates: Evidence from Moleculrs and Morphology. Mol. Evol. 11, 648-655.
Apicomplexa phylogeny McCutchan, T.F. The ribosomal genes of Plasmodium. Int. Rev. Cytol.99, 311-341.
Chryptomonads symbiosis evolution McFadden, G.I. 1990. Evidence that chryptomonad chloroplasts evolved from eukaryotic endosymbionts. J. Cell Sci. 95, 303-308.
Cryptomonads Chromists phylogeny McFadden, G.I., Gilson, P.R., and Hill, D.R. 1994. Goniomonas: rDNA sequences indicate that this phagotrophic flagellate is a close relative of the host component of cryptomonads. Eur. J. Phycol. 29, 29-32.
Chromists phylogeny McFadden, G.I., P.R. Gilson and R.F. Walker. 1995. Molecular phylogeny of chlorachniophytes based on Plastid rRNA and rbcl Sequences. 1995. Arch. Protistenkd. 145, 231-239.
Diatoms origin, evolution, structure Medlin, L.K., Williams, D.M. and Simms, P.A. 1993. The evoluton of the diatoms (Bacillariophyta). I. Origin of the group and assessment of the monophyly of its major divisions.. Eur. J. Phycol. 28, 261-75
Apicomplexa phylogeny. Life cycle Mehlhorn, H and W. Peters. 1980. Formation of kinetesand oocyst in Plasmodium gallinaceum (Haemosporidia) and considerations on phylogenetic relationships between Haemosporidis, Piroplasmida and other coccidia. Protistologica 16, 135-154.
Alveolates, dinos origins, phylogeny Mignot, J.P. and Brugerolle, G. 1975. Étude structurale du flagelle phagotrophe Colponema loxodes Stein. Protistologica 11, 429-444.
Alveolates, dinos origins, phylogeny Mignot, J.P. and Brugerolle, G. 1975. Etude ultrastructurale du flagellé phagotroph Colponema loxodes Stein. Protistologica 12, 429-444.
Amoebae, testacea sex Mignot, J.-P. and Raikov, I.B. 1992. Evidence for meiosis in the testate amoeba Arcella. J. Protozool. 39,289-289.
Opalozoa Mignot, J.-P. F._m. Affa'a. 1995. Patterning in Opalinids III. The cytoskeleton of Cepedea sudafricana (Fantham, 1923)Affa'a and Lynn 1994., and intermediate type between Opalina ranarum and Protoopalina pseudonutti. Arch. Protistenkd. 145, 241-249.
Dinoflagellates nuclei physiology Minguez A. et al. 1994. Dinoflagellates have a eukaryotic nuclear matrix with lamin-like proteins and topoisomerase II. J. Cell Sci. 107, 2861-1873.
Chromophytes, chrysos, brows, euglenoids structure Moestrup, Ø. 1982. Flagellar structure in algae: a review with new observations particularly on the Chrysophyceae, Pheophyceae (Fucophyceae), Euglenophyceae, and Reckertia. Phycologia 21, 427-528.
Greens, prasinos structure Moestrup, Ø. 1990. Scale structure in Mantonella squmata with some comments onthe phylogeny of the prasinophyceae. Phycologia 29, 437-442.
Greens, prasinos structure Moestrup, Ø. 1991. Further studies of presumably primitive green algae, including the description of Pediniophyceae class nov. and Resultor gen. nov. J. Phycol. 27, 119-123.
Zooflagellates, chromophytes, opalozoa Moestrup, Ø., and Andersen, R.A. 1991. Organization of heterotrophic heterokonts. . In: Patterson, D.J. and Larsen, J. (eds.) The Biology of Free-living Heterotrophic Flagellates. Clarendon Press. Oxford. pp. 333-360.
Plastids phylogeny, evolution Morden, C.W. Delwiche, C.F., Kuhsel, M. and Palmer, J.D. 1992. Gene phylogenies and the endosymbiotic origin of plastids. BioSystems 28, 75-90.
Cryptos, prasinos structure, trichocysts Morrall, S. and A.D. Greenwood. 1980. A comparison ofthe periodic substructure of the trichocysts of the Cryptophyceae and Prasinophyceae. BioSystems 12, 71-83.
Phycomycetes structure Moss, S.T. 1991. Thaustrochytrids and other zoosporic marine fungi. In: Patterson, D.J. and Larsen, J. (eds.) The Biology of Free-living Heterotrophic Flagellates. Clarendon Press. Oxford. pp. 415-426.
Chryptomonads symbiosis evolution MsFadden, Gilson, P.R., and Douglas, S.E. 1994. The photosynthetic endosymbiont in cryptomonad cells produces both chloroplast and cytoplasmic-type ribosomes. J. Cell Sci. 107, 649-57.
Protists physiology, microbodies Müller, M. 1975. Biochemistry of protozoan microbodies: peroxiosomes etc. Ann. Rev. Microbiol. 29, 467-83.
Metamonads, parabasalia physiology, hydrogenosomes Müller, M. 1988. Energy metabolism of protozoa without mitochondria. Ann Rev. Microbiol. 42, 465-88.
Metamonads origin, physiology Müller, M. 1992. Energy metabolism of ancestral eukaryotes: a hypothesis based on biochemistry of amitochondriate parasitic protists. BioSystems 28, 33-40.
Metamonads, parabasalia physiology, hydrogenosomes Müller, M. 1993, The Hydrogenosome, Journal of General Microbiology 139, 2879-89.
Metamonads, parabasalia diversity, structure Mylnikov, A.P. 1991. Diversity of flagellates without mitochondria. In: Patterson, D.J. and Larsen, J. (eds.) The Biology of Free-living Heterotrophic Flagellates. Clarendon Press. Oxford. pp. 149-158.
Ciliates genetics, physiology Nanney, D.L. 1980. Experimental Ciliatology. John Wiley & Sons.
Ciliates evolution Nanney, D.L. et al. 1989. Comparison of ribosomal and isozymic phylogenies of tetrahymenine ciliates, J. Protozool 36, 1-8.
Protists origins, phylogeny Nanney, D.L. et al. 1991. Eukaryotic origins: String analysis of 5s ribosomal RNA sequences from some relevant organisms. J. Mol. Evol. 32, 316-317.
chloroplasts phylogeny Nelissen, B., et al. 1995. An early origin of plastids within the cyanobacterial divergence is suggested by evolutionary trees based on complete 16S rRNA sequences. Mol. Biol. Evol. 12, 1666-73.
Eugelnozoa, kinetoplastids physiology Newton, B.A. et al. 1982. DNA of kinetoplastidae: A comparative study. In: H. van den Bossche ed. Comparative Biochemistry of Parasites Academic Press pp. 185-191.
Ciliates micronucleus, physiology Ng, S.F. 1986. The somatic function of the micronucleus of Ciliated Protozoa. . In: Patterson, D,J, & Corliss, J.O. eds, Progress in Protistology 1, 215-286.
Animals, plants, fungi phylogeny Nikoh, N. et al. 1994. Phylogenetic relationship of the Kingdoms Animalia, Plantae and Fungi inferred from 23 different protein species. Mol. Biol. Evol. 762-768.
Opalozoa, Jakobid flagellates structure, phylogeny O'Kelly. C.J. 1993. The Jakobid Flagellates: Structural features of Jakoba, Reclinomonas and Histiona and implications for the eraly diversification of eukaryotes. J. Euk. Microbiol. 40, 627-635.
Browns structure, evolution O'Kelly. C.J. 1989. The evolutionary origin of the brown algae: information from studies of motile cell ultrastructure. In: J.C. Green et al. (eds.) The Chromophyte Algae: Problems and Perspectives. Oxford. pp, 255-78.
Greens structure, evolution O'Kelly. C.J. and G.L. Floyd 1984. Correlations among paterns of sporangial structure and development, life histories snf ultrastructural features in the Ulvophyceae. In: Systematics of the Green Algae Academic Press.London pp. 121-156., D,E,G, and John, D.M. eds.
Greens structure, evolution O'Kelly. C.J. and G.L. Floyd 1984. Flagellar apparatus absolute orientations and the phylogeny of the green algae.. BioSystems 16, 227-251.
Amoebae physiology, feeding, ecology Old, K.M. and Chakraborty, S. 1986. Mycophagous Soil Amoebae: Their biology and significance in the ecology of soil-borne plant pathogens. . In: Patterson, D,J, & Corliss, J.O. eds, Progress in Protistology 1, 163- 194.
Ciliates, hypotrichs DNA replication Olins, D.E. and A. L. Olins 1994. The replication band of ciliated protozoa. Int. Rev. Cytol. 153, 137-169.
Ciliates physiology swimming Omoto, C.K. Mechanochemical coupling in cilia. Int. Rev. Cytol. 131, 255-291.
Chromophytes, opalozoa structure, phylogeny Patterson, D.J. 1989. Stramenopiles: chromophytes from a protistan perspective.In: J.C. Green et al. (eds.) The Chromophyte Algae: Problems and Perspectives. Oxford. pp, 357-380.
Actinopoda, heliozoa monograph Patterson, D.J. 1979. On the organization and classification of the protozoan Actinophrys sol, Enrenberg 1830. Microbios 26, 165-208.
Opalozoa structure Patterson, D.J. 1986. The fine structure of Opalina ranarum (family Opalinidae): Opalinid phylogeny and classification
opalozoa taxonomy, phylogeny Patterson, D.J. 1986. The fine structure of Opalina ranarum (Family Opalinidae): Opalinid phylogeny and clasification. Protistologica 21, 413-428.
Actinopoda, heliozoa, chromophytes structure, evolution Patterson, D.J. 1989. The Actinophyrid Heliozoa (Sarcodina Actinopoda) as Chromophytes. In: J. Kriatiansen and R.A. Andersen eds. Chrysophytes: Aspects and Problems. Cambridge University Press. pp. 49-67.
Zooflagellates, chromophytes review Patterson, D.J. 1993. The current status of the free-living heterotrophic Flagellates, J. Euk. Microbiol. 40, 606-609.
Protists phylogeny Patterson, D.J. and Brugerolle, G. 1988. The ultrastructural identity of Stephanopogon apogon and the relatedness of the genus to other kinds of protists. Eur. J. Protistol. 23, 279-290.
Protists flagellates heterotrophs Patterson, D.J. and J. Larsen (eds.). 1991. The Biology of Free-living Heterotrophic Flagellates. Oxford University Press. (Contains many important articles) QL368 F5 B46
Protists origin phylogeny Patterson, D.J. and Sogin, M.L. 1992. Eukaryote origins and protistan diversity. In: Hartman, H. & Matsuo, K. (eds.), The Origin and Evolution of Prokaryotic and Eukaryotic Cells. World Scientific Publishers. Singapore. pp. 13-46.
Heliozoa

Actinopods

evoution phylogeny Patterson, D.J. and T. Fenchel. 1985. Insights into the evolution of Heliozoa (Protozoa Sarcodina) as provided by ultrastructural studies on a new species of flagellate from the genus Pteridomonas. Biol. J. Linn. Soc. 34, 381-403.
Protists heterotrophic flagellates phylogeny Patterson, D.J. and Zölffel. 1991. Heterotrophic flagellates of uncertain taxonomic position. In: Patterson, D.J. and Larsen, J. (eds.) The Biology of Free-living Heterotrophic Flagellates. Clarendon Press. Oxford. pp. 427-476.
Protists heterotrophic flagellates phylogeny Patterson, D.J., Larsen, J. and Corliss, J.O. 1989. The Ecology of Hetertrophic Flagellates and Ciliates living in Marine Sediments. In: Patterson, D,J, & Corliss, J.O. eds, Progress in Protistology 3, 185-278.
Foraminifera phylogeny Pawlowski, J. et al. 1994. Phylogenetic position of foraminifera inferred from LSU rRNA gene sequences. Mol. Biol. Evol. 11, 929-38.
Euglenozoa kinetoplastids parasitism cell biology Pays, E. 1991. Genetics of antigenic variation in African Trypanosomes. Res. in Microbiol. 142, 731-735.
Ciliates structure development Peck, R.K. 1977. The ultrastructure of the somatic cortex of Pseudomicrothorax dubius: Structure and function of the epiplasm in ciliated protozoa. J. Cell Sci. 25, 367-385.
Protists

algae

phylogeny Perasso, R. Baroin, A, Hu, Q.L., Bachellerie, J.P. and Adoutte, A. 1989. Origin of the algae. Nature 339, 142-144.
Apicomplexa structuer phylogeny Perkins, F.O. 1991. "Sporozoa":Apicomplexa, Microsporidia, Haplosporida, Paramyxea, Myxosporidia and Actinosporidia. In: Harrison, F.W. and Corliss, J.O. (eds). Microscopic Anatomy of Invertebrates, Vol. 1, pp.261-331.
dinos sexuality Pfiester, L. 1987. Sexual Reproduction, In: F.J.R. Taylor (ed.) The Biology of Dinoflagellates. Blackwells, pp. 183-9
Dinoflagellates sexuality Pfiester, L.A. 1989. Dinoflagellate Sexuality. Int. Rev. Cytol. 114, 249-272.
Ciliates exocytosis trichocysts Platner, H. 1989. Regulation of membrane fusion during exocytosis. Int. Rev. Cytol. 119, 197-286.
Dinoflagellates Pollinger, U. 1987. Freshwater Ecosystems, , In: F.J.R. Taylor (ed.) The Biology of Dinoflagellates. Blackwells, pp. 504-520.
Labyrinthulids Porter, D.. 1990. Phylum Labyrinthulomycota. In Handbook of Protoctista. Margulis et al. eds Jones & Bartlett, Boston. pp 388-397.
Metamonads diplomonads Poynton, S. and C. Morrison. 1990. Morphology of diplimonad flagellates: J. Protozool. 23, 28-40.
Flagellates heterotrophs diversity Preisig, H.R., Vors, N. and Hällfors, G. 1991. Diversity in heterophic heterokont flagellates. In: Patterson, D.J. and Larsen, J. (eds.) The Biology of Free-living Heterotrophic Flagellates. Clarendon Press. Oxford. pp. 361-400.
Ciliates evolution Preparata, R.M. et al. 1989. Ciliate evolution: The ribosomal phylogenies of the tetrahymenine ciliates. J. Mol. Evol. 28, 427-441.
Ciliates hypotrichs DNA macronuclei Prescott, D.M. 1994. The DNA of Ciliated Protozoa. Microbiol. Rev. 58, 233-267
Ciliates structure Puytorac, P. de, Grain, J. 1976. Ultrastructure du cortex buccal et évolution chex lec ciliés. Protistologica 12, 49-67.
Ciliates phylogeny Puytorac, P. de, Grain, J., and Legendre, P. 1994. An attempt at reconstructing a phylogenetic tree of the Ciliophora using parsimony methods. Europ.J. Protistol. 30, 1-17.
Ciliates structure systematics Puytorac, P. de, Njiné, T. 1970. Sur l'ul,trastructure des Loxodes (Ciliés Holotriches). Protistologica 6, 427-444.
Protists phylogeny Qu, L.H. et al. 1988. Molecular evolution of the 5' terminal region of large subunit rRNA from lower eukaryotes: a broad phylogeny covering photosynthetic and non-photosynthetic protists. BioSystems. 21, 203-208.
Protists Phylogeny Ragan, M.A. 1988. Ribosomal RNA and the major lines of evolution: A perspective. Biosystems 21, 177-188.
Protists nuclei genome mitosis Raikov, I.B. 1989. Nuclear Genome of the Protozoa. . In: Patterson, D,J, & Corliss, J.O. eds, Progress in Protistology 3, 21-86.
Protists mitosis review Raikov, I.B. 1994. The diversity of forms of mitosis in Protozoa: a comparative review. Europ.J. Protistol. 30, 253-269.
Protists meiosis review Raikov, I.B. 1995. Meiosis in Protists: Recent advances and persisting problems. Europ. J. Protistol. 31, 1-7.
Greens phylogeny Rausch, H. et al. 1989. Phylogenetic relationship of the green algae Volvox carteri deduced from samll-subunit rRNA comparisons, J. Mol. Evol. 29, 255-265.
Fungi phylogeny Rayner, A.D.M. et al. (eds.) 1987. Evolutionary Biology of the Fungi. Cambridge University Press. (Contains many pertinent articles).
Protists symbiosis Reisser. W. 1986. Endosymbiotic associations of freshwater Protozoa and algae. . In: Patterson, D,J, & Corliss, J.O. eds, Progress in Protistology 1, 195-214.
Dinoflagellates nuclei Rizzo, P.J. 1987. Biochemistry of the dinoflagellate nucleus. In: F.J.R.Taylor ed. The Biology of Dinoflagellates. Blackwell. pp. 143-173.
Foraminifera systematics Robbins, L.L, and N. Healy-Williams. Toward a classification of planktonic foraminifera based on biochemical, geochemical and morphological criteria. Journal of Foraminiferal Res. 21, 159-167.
Chrysomonads flagella Roberts, K. et al. 1981. The flagellar apparatus of Chilomonas paramecium (Cryptophyceae) and comparison with certain zooflagellates. J. Phycol. 17, 159-167.
Dinoflagellates flagella Roberts, K.R. 1985. The flagellarapparatus of Oxyrrhis marina (Pyrrophyta). J. Phycol. 21, 641-655.
Dinoflagellates flagella Roberts, K.R. 1989. Comparative analyses of the dinoflagellate flagellar apparatus. II. Ceratium hirudinella. J. Phycol. 25, 270-280.
Dinoflagellates flagella Roberts, K.R. 1991. The flagellar apparatus and cytoskeleton of dinoflagellates; organization and use in systematics. In: Patterson, D.J. and Larsen, J. (eds.) The Biology of Free-living Heterotrophic Flagellates. Clarendon Press. Oxford. pp 285-302.
Dinoflagellates flagella Roberts, K.R. and Timpano, P. 1989. Comparative analyses of the dinoflagellate flagellar apparatus. I. Woloszynskia sp. J. Phycol. 25, 26-36.
Protists chloroplasts phylogeny Rothschild, L.J. and Haywood, P. 1987. Protistan Phylogeny and Chloroplast Evolution: Conflicts and Congruence. . In: Patterson, D,J, & Corliss, J.O. eds, Progress in Protistology 2, 1-68.
Protists systematics Rothschild, L.J. and P. Haywood. 1988. "Protistan" nomenclature: Analysis and refutation of some potential objections. BioSystems 21, 197-202.
Protists phylogeny Round, F.E. 1980. The evolution of pigmented and unpigmented unicells - a recognition of the protista. BioSystems 12, 61-69.
Diatoms phylogeny Round, F.E. and R.M. Crawford. 1981. The lines of evolution of the Bacillariophyta I. Origin. Proc. Roy. Soc. Lond B 211, 237-260.
Diatome phylogeny Round, F.E. and R.M. Crawford. 1984. The lines of evolution of the Bacillariophyta. II. The centric series. Proc. Roy. Soc. Lond. B 221, 169-188.
Diaoms Round, F.E. et al. 1990. The Diatoms: Biology and Morphology of the Genera. Cambridge University Press.
Animals placozoa Ruthmann, A., Behrendt, G. and Wahl, R. 1986. The ventral epithelium of Trichoplax adhaerens (Placozoa): Cytoskeletal structures, cell contacts adnd endocytosis. Zoomorphology 106, 115-120
Ciliates phylogeny diviersity Sadler, L.A. and Brunk, C.F. 1992. Phylogenetic relations and unusual diversity in histone H4 proteins within the Tetrahymena pyriformis complex.. Mol. Biol and Evol. 9, 70-84.